Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDGENHSVVSEFLFLGLTHSWEIQLLLLVFSSVLYVASITGNIFIVFSVTTDPHLHSPMYFLLASLSFIDL----GACSVTSPKMIYDLFRKRKVISFGGCIAQIFFIHVIGGVEMVLLIAMAFDRYVALCKPLHYLTIMSPRMCLSFLAVAWTLGVSHSLFQLAFLVNLAF-CGPNVLDSFYCDLPRLLRLACTDTYRLQFMVTVNSGFIC---VGTFFILLI----SYVFILFTVWKHSSGGSSKALSTLSAHSTVV--------------LLFFGPPMFVYTRPHPNSQMDK-FLAI--FDAVLTPFLNPVVYTFRNKEMKAAIKRVCKQLVIYKKIS |
2HPY Chain:A ((34-315)) | ----------------LAEPWQFSMLA-AYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTT----LYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS----------------NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV-KEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFT--HQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDD |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2HPY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -224336 for 1860 contacts (-120.6/contact) +
2D Compatibility (PS) -24843 + (NN) -887 + (LL) 3020
1D Compatibility (HY) -1200 + (ID) 800
Total energy: -249046.0 ( -133.90 by residue)
QMean score : 0.106
|
|
|