Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSHTNVTIFHPAVFVLPGIPGLEAYHIWLSIPLCLIYITAVLGNSILIVVIVMERNLHVPMYFFLSMLAVMDILLSTTTVPKALAIF----WLQAHNIAFDACVTQGFFVHMMFVGESAILLAMAFDRFVAICAPLRYTTVLTWPVVGRIALAVITRSFCIIFPVIFLLKRLPFCLTNIVPHSYCEHIGVARL-----ACADITVNIWYG-------FSVPIVMVILDVILIAVSYSLILRAVFRLPSQD-----ARHKALSTCGSHLCVILMFYVPSFFTLLTHHFGRN-IPQHVHILLANLYVAVPPMLNPIVYGVKTKQIREGVAHRFFDIKTWCCTSPLGS |
2YCW Chain:A ((8-283)) | ----------------------QQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFL----CELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMT-----RARAKVI---ICTVWAISALVSFLP-----IMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAM-NPIIYCRSPDFRKAFKRLLAF------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -286177 for 1821 contacts (-157.2/contact) +
2D Compatibility (PS) -25446 + (NN) -5117 + (LL) 3416
1D Compatibility (HY) -19600 + (ID) 3250
Total energy: -336174.0 ( -184.61 by residue)
QMean score : 0.188
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