Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSASNITLTHPTAFLLVGIPGLEHLHIWISIPFCLAYTLALLGNCTLLLIIQADAALHEPMYLFLAMLAAIDLVLSSSALPKMLAIFWFRDREINFFACLAQMFFLHSFSIM----ESAVLLAMAFDRYVAICKPLHYTKVLTGSLITKIGMAAVARAVTLMTPLPFLLRCF-----HYCRG--PVIAHCYCEHMAVVRLACGDTSFNNIYGIAVAM--FIVVLDLLLVILSYIF-----ILQAVLLLASQEARYKAFGTCVSHIGAILAFYTTVVISSVMHRVARH-AAPHVHILLANFYLLFPPMVNPIIYGVKTKQIRESILGVFPRKDM |
| 4LDL Chain:A ((197-447)) | ----------------------------------------VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCE----FWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKN---------KARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEE------TCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQ---KFALKE--HKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILL-NWIGYVNSGFNPLIYCRSPDFRIAFQELLCL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LDL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -219416 for 1566 contacts (-140.1/contact) +
2D Compatibility (PS) -23130 + (NN) -6823 + (LL) 6988
1D Compatibility (HY) -22000 + (ID) 3400
Total energy: -267781.0 ( -171.00 by residue)
QMean score : 0.289
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