Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGNITADNSSMSCTIDHTIHQTLAPVVYVTVLVVGFPANCLSLYFGYLQIKARNELGVYLCNLTVADLFYICSLPFW-LQYVLQHDNWSHGDLSCQVCGILLYENIYISVGFLCCISVDRYLAVAHPFRFHQFRTLKAAVGVSVVIWAKELLTSIYF-LMHEEVIEDENQHRVCFEHYPIQA--WQRAINYYRFLVGFLFPICLLLASYQGILRAVRRSHGTQKSR-KD----QIQRLVLSTVVIFLACFLPYHVLLLVRSVWEASCDFAKG---VFNAYHFSLLLTSFNCVADPVLYCFVSETTHRDLARLRGACLAFLTCSRTGRAREAYPLGAPEASGKSGAQGEEPELLTKLHPAFQTPNSPGSGGFPTGRLA |
| 4RWD Chain:A ((128-400)) | --------------------------LYSAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATSTLPFQSAKYLME--TWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWV--LASGVGVPIMVMAVTRPRDGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSVRLLSGSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTL----VDIDRRDPLVVAALHLCIALGYANSSLNPVLYAFLDENFKRCFRQLC---------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RWD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -230962 for 1968 contacts (-117.4/contact) +
2D Compatibility (PS) -26619 + (NN) -6520 + (LL) 4220
1D Compatibility (HY) -26800 + (ID) 4000
Total energy: -290681.0 ( -147.70 by residue)
QMean score : 0.246
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