Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNWVNDSIIQEFILLGFSDRPWLEFPLLVVFLISYTVTIFG-NLTIILVSRLDTKLHTPMYFFLTNLSLLDLCYTTCTVPQMLVNLCSIRKVISYRGCVAQLFIFLALGATEYLLLAVMSFDRFVAICRPLHYSVIMHQRLCLQLAAASWVTGFSNSVWLSTLTLQLPLCDPYVIDHFLCEVPALLKLSCVETTANEAELFLVSELFHLIPLTLILISYAFIV----RAVLRIQSAEGRQKAFGTCGSHLIVVSLFY------STAVSVYLQPPSPSSKDQGKM---VSLFYGIIAPMLNPLIYTLRNKEVKEGFKRLVARVFLIKK |
| 1GZM Chain:A ((36-316)) | -------------------EPW-QFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMA------LACAAPPLVGWSRYIPEGMQCSC-GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIF--THQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNDDE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GZM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -246029 for 2112 contacts (-116.5/contact) +
2D Compatibility (PS) -26484 + (NN) -2420 + (LL) 1660
1D Compatibility (HY) -4000 + (ID) 900
Total energy: -278173.0 ( -131.71 by residue)
QMean score : 0.245
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