Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | METANYTKVTEFVLTGLSQTREVQLVLFVIFLSFYLFIL-----PGNILIICTIRLDPHLTSPMYFLLANLALLDIWYS----SITAPKMLIDFFVERKIISFG--GCIAQLFFLHFVGASEMFLLTVMAYDRYAAICRPLHYATIMNRRLCCILVALSWMGGFIHSIIQVALIVRLPF-CGPNELDSYFCDITQVVRIACANTF--PEELVMICSSGLIS-----VVCFIALLMSYAFLLALLKKHSGSGEN---TNRAMSTCYSHITIVVLMF--------GPSIYIYARPFDSFS-LDKVVSVFHTVIFPLLNPIIYTLRNKEVKAAMRKVVTKYILCEEK |
| 3PQR Chain:A ((40-317)) | -------------------------------LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFV------FGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-----NFRF-----------GENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3PQR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -216830 for 1793 contacts (-120.9/contact) +
2D Compatibility (PS) -24789 + (NN) -5751 + (LL) 6468
1D Compatibility (HY) -21600 + (ID) 3350
Total energy: -265852.0 ( -148.27 by residue)
QMean score : 0.206
|
|
|