Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEKINNVTEFIFWGLSQSPEIEKVCFVVFSFFYIIILLGNLLIMLTVCLSNLFKSPMYFFLSFLSFVDICYSSVTAPKMIVDLLAKDKTISYVGCMLQLFGVHFFGCTEIFILTVMAYDRYVAICKPLHYMTIMNRETCNKMLLGTWVGGFLHSIIQVALVVQLPF---------------CGPNEIDHYFCDVHPVLKLACTETYIVGVVVTANSGTIALGSFVILLISYSIILVSLRKQSAEGRRKALST------CGSHIAMVVIFFGPC--------TFMYMRPDTTFSEDKM--VAVFYTIITPMLNPLIYTLRNAEVKNAMKKLWGRNVFLEAKGK |
| 2YDV Chain:A ((18-312)) | ---------------------------------VLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA--ISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF-----AIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVP-MNYMVYFNFFACVLVPL---LLMLGVYLRIFLAARRQLKQMESQ---------STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPF |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -247710 for 1869 contacts (-132.5/contact) +
2D Compatibility (PS) -25876 + (NN) -9741 + (LL) 4264
1D Compatibility (HY) -25600 + (ID) 3050
Total energy: -307713.0 ( -164.64 by residue)
QMean score : 0.309
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