Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAAQNGNTSFTPNFNPPQDHASSLSFNFSYGDYDLPMDEDEDMTKTRTFFAAKIVIGIALAGIMLVCGI-GNFVFIAALTRYKKLRNLTNLLIANLAISDFLVAIICCPFEMDYYVVRQLSWEHGHVLCASVNYLRTVSLYVSTNALLAIAIDRYLAIVHPLKPRMNYQT---ASFLIALVWMVSILIAIPSAYFATETVLFIVKSQEKIFCGQIWPVDQQLYYKSYFLFIFGVEFVGPVVTMTLCYARISRELWFKAVPGFQTEQIRKRLRCRRKTVLVLMCILTAYVLCWAPFYGFTIVRDFFPTVFVKEKHYLTAFYVVECIAM--SNSMINTVCFVTVKNNTMKYFKKMMLLHWRPSQRGSKSSADLDLRTNGVPTTEEVDCIRLK |
| 5C1M Chain:A ((21-296)) | ---------------------------------------------------------MALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADAL-ATSTLPFQSVNYLMG--TWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKA-LDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTK-----YRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRL--KSVRMLSGS--KEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKAL---ITIPETTFQTVSWHF-CIALGYTNSCLNPVLYAFLDENFKRCF---------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 5C1M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -218066 for 1963 contacts (-111.1/contact) +
2D Compatibility (PS) -27332 + (NN) -1403 + (LL) 6804
1D Compatibility (HY) -32800 + (ID) 3750
Total energy: -276547.0 ( -140.88 by residue)
QMean score : 0.218
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