Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNATGTPVAPESCQQLAAGGHSRLIVLHYNHSGRLAGRGGPEDGGLGALRGLSVAASCLVVLENLLVLAAITSHMRSRRWVYYCLVNITLSDL-LTGAAYLANVLLSGARTFRLAPAQWFLREGLLFTALAAST--FSLLFTAGERFATMVRPVAESGATKTSRVYGFIGLCWLLAALLGMLPLLGW--------NCLCAFDRCSSLLPLYSKRYILFCLVI-FAGVLATIMGLYGA-IFRLVQASGQKAPRPAARRKARRLLKTVLMILLAFLVCWGPLFGLLLADVFGSNLWAQEYLRGMDW------ILALAVLNSAV-NPIIYSFRSREVCRAVLSFLCCGCLRLGMRGPGDCLARAVEAHSGASTTDSSLRPRDSFRGSRSLSFRMREPLSSISSVRSI |
| 3PQR Chain:A ((55-326)) | ---------------------------------------------------------------NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNL-EGF-FATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG-VAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFY-IFTH--------QGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN--------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PQR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -217294 for 1765 contacts (-123.1/contact) +
2D Compatibility (PS) -26309 + (NN) -15529 + (LL) 6500
1D Compatibility (HY) -25200 + (ID) 3350
Total energy: -281182.0 ( -159.31 by residue)
QMean score : 0.354
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