Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQAALTAFFVLLFSLLSLLGIAANGFIVLVLGREWLRYGRLLPLDMILISLGASRFCLQLVGTVHNFYYSAQKVEYSGGLGRQFFHLHWHFLNSATFWFCSWLSVLFCVKIANITHSTFLWLKWRFPGWVPWLLLGSVLISFIITLLFFWVNYPVYQEFLIRKFSGNMTYKWNT-R-IETYYFPSLKLVIWSIPFSVFLVSIMLLINSLRRHTQRMQHNGH----------------------------------------------------------------------------------------------------------------------------------------------------SLQDPSTQAHTRALKSLISFLILYALSFLSLIID-AAKFI-S----MQNDFYWPWQIAVYLCISVHPFILIFSNLKLRSVFSQLLLLARGFWVA |
| 3V2Y Chain:A ((63-495)) | -----IKLTSVVFILICCFIILENIFVLLTIWKTK---KFHRPMYYFIGNLALSDLLAGVAYTANLLLSGA-TTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITML---K---------NNFRLFLLISACWVISLILGGLPIMGWNC-------IS---ALSSCSTVLPLYHKHYIL-FCTTVFTLLLLSIVILYCRIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGRPL----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3V2Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -214950 for 1949 contacts (-110.3/contact) +
2D Compatibility (PS) -27359 + (NN) -5287 + (LL) 3816
1D Compatibility (HY) -14000 + (ID) 1600
Total energy: -259380.0 ( -133.08 by residue)
QMean score : 0.255
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