Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAKQYDSVECPFCDEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRKGSQITQQSTNQSRNPATTNQTEFERVF |
3NIZ Chain:A ((20-304)) | ---------------MEKYQKLEKVGEGTYGVVYKAKDSQ-GRIVALKRIR------GIPSTAIREISLLKELHHPNIVSLIDVIHSE-----RC---LTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVR-------HEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQE--GIDLLSNMLCFDPNKRISARDAMNHPYFKDLDPQI-------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3NIZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -185783 for 2166 contacts (-85.8/contact) +
2D Compatibility (PS) -29242 + (NN) -8411 + (LL) 3484
1D Compatibility (HY) -31600 + (ID) 5800
Total energy: -257352.0 ( -118.81 by residue)
QMean score : 0.478
|
|
|