Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------------------------------------------------AITCGQVGSAIAPCISYVTGRSGLTQ---GCCNGVKGLNNAAR-----------TTADRQAACRCLKSLAGSI-----KSLNLGTVAGVPGKCGVNVGFPISLSTDCNKVS--------
1QPO Chain:A ((116-284))
IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAA------GSVVDALRAVRNAAPDLPCEVEVDS-LEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATY-AETGVDY---LAVGALTHSVRVLDIGLDM
General information:
TITO was launched using:
RESULT:
Template:
1QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28397 for 408 contacts (-69.6/contact) +
2D Compatibility (PS) -8461 + (NN) -1107 + (LL) -416
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -41081.0 ( -100.69 by residue)
QMean score : 0.275
(partial model without unconserved sides chains):
PDB file :
Tito_1QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QPO-query.scw
PDB file :
Tito_Scwrl_1QPO.pdb
: