Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------ACQASQL-AVCASAILSGAKPSGECCGNLRAQQGCFCQYAKDPTYGQYIRSPHARDTLTS-----------CGLAVPHC----
1CWV Chain:A ((393-492))
NRWIYDGGRSLVSSLEASRQCQGSDMSAVLESSRATNGTRAPD--GTLWGEWGSLTAYSSDWQSGEYWVKKTSTDFETMNMDTGALQPGPAYLAFPLCALSI
General information:
TITO was launched using:
RESULT:
Template:
1CWV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18762 for 366 contacts (-51.3/contact) +
2D Compatibility (PS) -6757 + (NN) -1416 + (LL) 112
1D Compatibility (HY) -2000 + (ID) 950
Total energy: -29773.0 ( -81.35 by residue)
QMean score : 0.254
(partial model without unconserved sides chains):
PDB file :
Tito_1CWV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CWV-query.scw
PDB file :
Tito_Scwrl_1CWV.pdb
: