Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QAPPPPPQCDPG--LLSPCAAPIFFGTAPSASCCSSLKA-----------QQGCFCQYAKDPTYASY--INSTNARKMIAACGIPFPNCS
1T12 Chain:A ((2-78))
------ITCGQVTSNLAPCLAYLRNTG-PLGRCCGGVKALVNSARTTEDRQIACTC--LKSAA-GAISGINLGKAAGLPSTCGVNIP---
General information:
TITO was launched using:
RESULT:
Template:
1T12.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33972 for 390 contacts (-87.1/contact) +
2D Compatibility (PS) -6074 + (NN) 1363 + (LL) 100
1D Compatibility (HY) -4000 + (ID) 1000
Total energy: -43583.0 ( -111.75 by residue)
QMean score : 0.366
(partial model without unconserved sides chains):
PDB file :
Tito_1T12.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T12-query.scw
PDB file :
Tito_Scwrl_1T12.pdb
: