Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRVLSEDKKVACIVTDLQVCLSALETPIPPSAECCKNLKI-----------QKSCLCDYMENPSIEKYLEP--ARKVFAACGMPYPRC
1SIY Chain:A ((7-78))
-------------QGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR-GINPNNAEALPGKCGVNIP--
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16600 for 370 contacts (-44.9/contact) +
2D Compatibility (PS) -5907 + (NN) -2106 + (LL) 1588
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -26075.0 ( -70.47 by residue)
QMean score : 0.333
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: