Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
RVVKGSGEEVNVTCDAT--QLSSCVTAVSTGAPPSTDCCGKLKE-----------HETCLCTYIQNPLYSSY--VTSPNARKTLAACDVAYPTC
1T12 Chain:A ((2-78))
-----------ITCGQVTSNLAPCLAYLRNTG-PLGRCCGGVKALVNSARTTEDRQIACTC--LKSAA-GAISGINLGKAAGLPSTCGVNIP--
General information:
TITO was launched using:
RESULT:
Template:
1T12.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27135 for 390 contacts (-69.6/contact) +
2D Compatibility (PS) -6079 + (NN) 449 + (LL) 700
1D Compatibility (HY) -5600 + (ID) 750
Total energy: -38415.0 ( -98.50 by residue)
QMean score : 0.217
(partial model without unconserved sides chains):
PDB file :
Tito_1T12.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T12-query.scw
PDB file :
Tito_Scwrl_1T12.pdb
: