Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPPGGCVPQLNRLLACRAYLVPGAADPSADCCSALSSISR--------D--CACSTM----------GIINSIPSRCNIGRVNCSA
1SIY Chain:A ((2-76))
----TCGQVQGNLAQCIGFLQKG-GVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVN------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41508 for 358 contacts (-115.9/contact) +
2D Compatibility (PS) -5521 + (NN) -2002 + (LL) 196
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -52235.0 ( -145.91 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: