Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VCNMSNDEFMKCQPAAAATSNPTTNPSAGCCSALSHAD----------LNCLCSYKNSPWLSIY-NIDPNRAMQLPAKCGLTMPANC
2ALG Chain:A ((4-80))
-CGQVSSSLAPCIPYVRGGG----AVPPACCNGIRNVNNLARTTPDRQAACNC-LKQL--SASVPGVNPNNAAALPGKCGVSIPY--
General information:
TITO was launched using:
RESULT:
Template:
2ALG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22554 for 422 contacts (-53.4/contact) +
2D Compatibility (PS) -6613 + (NN) -1649 + (LL) 40
1D Compatibility (HY) -3200 + (ID) 850
Total energy: -34826.0 ( -82.53 by residue)
QMean score : 0.222
(partial model without unconserved sides chains):
PDB file :
Tito_2ALG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ALG-query.scw
PDB file :
Tito_Scwrl_2ALG.pdb
: