Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DLRKGCYDLGITVLMGCPDSIDKKLPAPPTPSEGCCTLVRTIGM----------KCVCEIVNKKIED--TIDMQKLVNVAAACGRPLA----PGSQCGSYRVPGA
1SIY Chain:A ((2-90))
----TCGQVQGNL-AQCIGFLQKGG----VVPPSCCTGVKNILNSSRTTADRRAVCSCLKA--AAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI-----
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39045 for 507 contacts (-77.0/contact) +
2D Compatibility (PS) -7724 + (NN) -4944 + (LL) 272
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -53791.0 ( -106.10 by residue)
QMean score : 0.283
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: