Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QDNNPLEHCRDVFVSFMPCMGFVEGIFQQPSPDCCRGVTHLNNVVKFTSPGSRNRQDSGETERVCLCIEIMGNANHLPFLPAAINNLPLRCSLTLSFPISVDMDCSQFRNTKNPDVEKLN
1AFH Chain:A ((1-93))
-----AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTA----------DRRAACNCLKNAAAGVS-GLNAGNAASIPSKCGVSIPYTISTSTDCSRVN-----------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89998 for 764 contacts (-117.8/contact) +
2D Compatibility (PS) -9055 + (NN) 1699 + (LL) -260
1D Compatibility (HY) -1200 + (ID) 1200
Total energy: -100014.0 ( -130.91 by residue)
QMean score : 0.160
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: