Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LTCGQVQSRMTPCLPYLTGSGPLGRCCGGVKGLLGAAKTPADRKTVCTCLKSAAGSIG------G----INVRKAAGLPNMCGVNIPYQISPSTDCTKVQ
1PNB Chain:B ((13-67))
------------------------QCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI-------------
General information:
TITO was launched using:
RESULT:
Template:
1PNB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14999 for 236 contacts (-63.6/contact) +
2D Compatibility (PS) -4370 + (NN) 896 + (LL) 1732
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -20691.0 ( -87.67 by residue)
QMean score : 0.170
(partial model without unconserved sides chains):
PDB file :
Tito_1PNB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PNB-query.scw
PDB file :
Tito_Scwrl_1PNB.pdb
: