Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LTCGQVQSRMTPCLPYLTGSG-PLGRCCGGVKGLLGAAKTPADRKTVCSCLKSAAGSI-GGINVRKAAGLPNMCGVNIPYQISPSTDCTKVQ
1N89 Chain:A ((4-65))
------ASQLAVCASAILSGAKPSGECCGNLRA-----------QQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVP-------------
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19569 for 379 contacts (-51.6/contact) +
2D Compatibility (PS) -6129 + (NN) -1392 + (LL) 1716
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -28074.0 ( -74.07 by residue)
QMean score : 0.077
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: