Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LSCGDVATQLAPCINYLRSAGPLPVACCNGVKNLKNSAATTQDRRTACKCLINASKSI-SGVNFGLAAGLPGKCGVNIPYKISPSTNCDQVN
1N89 Chain:A ((4-65))
------ASQLAVCASAILSGAKPSGECCGNLRA-----------QQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVP-------------
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32463 for 386 contacts (-84.1/contact) +
2D Compatibility (PS) -6048 + (NN) -1297 + (LL) 1164
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -41744.0 ( -108.15 by residue)
QMean score : 0.246
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: