Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DKCGNQIQGLLNKCSPILLGK-SPSAACCGLIRSADM----------GCVCPKVTPQIAKQINVSKVVSVVKSCGRNVP----HRTRCGSIVTP
1SIY Chain:A ((2-90))
-TCGQVQGNL-AQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI---
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25540 for 519 contacts (-49.2/contact) +
2D Compatibility (PS) -7366 + (NN) 393 + (LL) 204
1D Compatibility (HY) -2000 + (ID) 1000
Total energy: -35309.0 ( -68.03 by residue)
QMean score : 0.321
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: