Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----VTCSPAQLSPCVGAITSSSPPSGLCCSKVRQ------QKPCLCQYMKNPY----LRKFVNTPNAKKVASQCRTPFPRC
2HZD Chain:A ((1-82))
MDNDAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSRDLVPR-
General information:
TITO was launched using:
RESULT:
Template:
2HZD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5632 for 334 contacts (-16.9/contact) +
2D Compatibility (PS) -6891 + (NN) -2878 + (LL) 56
1D Compatibility (HY) 800 + (ID) 600
Total energy: -15145.0 ( -45.34 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_2HZD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HZD-query.scw
PDB file :
Tito_Scwrl_2HZD.pdb
: