Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------APCEVGQLTVCM--PAITTGAK-PSGACCANLGAQQGCFCQYAKDPALGRYITSPHARDTLLS-----------CGLAVPRC----
1CWV Chain:A ((393-492))
NRWIYDGGRSLVSSLEASRQCQGSDMSAVLESSRATNGTRAPDG----TLWGEWGSLTAYSSDWQSGEYWVKKTSTDFETMNMDTGALQPGPAYLAFPLCALSI
General information:
TITO was launched using:
RESULT:
Template:
1CWV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21330 for 342 contacts (-62.4/contact) +
2D Compatibility (PS) -6622 + (NN) -1850 + (LL) 400
1D Compatibility (HY) -1200 + (ID) 800
Total energy: -31402.0 ( -91.82 by residue)
QMean score : 0.264
(partial model without unconserved sides chains):
PDB file :
Tito_1CWV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CWV-query.scw
PDB file :
Tito_Scwrl_1CWV.pdb
: