Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQCLDNLSNMQVCAPLVLP-----GAVNP-----APNSNCCIALQATNKDCICNALR-----------------AATTFTTSCNLPSLDC
1S6D Chain:A ((19-101))
-------EMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQPC
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33543 for 339 contacts (-98.9/contact) +
2D Compatibility (PS) -5608 + (NN) -1837 + (LL) 492
1D Compatibility (HY) -6400 + (ID) 750
Total energy: -47646.0 ( -140.55 by residue)
QMean score : 0.216
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: