Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QISTSCTASMI--SSFTPCLNFITGSTS---NG-SS-----PTQGCCGAVKSLMSGSMDCACLIITANVP--F-Q--LPINRTLALGLPRACNMGGVPVQCKGGN
1S6D Chain:A ((10-102))
----GCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM--SQPCQ---
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61213 for 526 contacts (-116.4/contact) +
2D Compatibility (PS) -7891 + (NN) 48 + (LL) -48
1D Compatibility (HY) -4400 + (ID) 850
Total energy: -74354.0 ( -141.36 by residue)
QMean score : 0.253
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: