Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
TWEVKMAGAELSDAQCKEERN--LGINACKPVVY-----GKLP----------SPECCQRVRVTHLECVCPVISPQLAALI-------------DINRAVRLIEGCGRRVPRHYKCGSITTP
2LVF Chain:A ((4-101))
-----------AQEECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25812 for 402 contacts (-64.2/contact) +
2D Compatibility (PS) -7144 + (NN) -1119 + (LL) 1548
1D Compatibility (HY) -3200 + (ID) 500
Total energy: -36227.0 ( -90.12 by residue)
QMean score : 0.256
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: