Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QAQCGGRNLSILAPCLPAAKANVQPSAACCRALSSFATNTGEDCLCAAASSQQ-----QS---GA----KVEFAKYIPQKCQLTYKAGIVCNGVVIPGGQ
1SM7 Chain:A ((45-100))
-------------------------REQCCNELY----QEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ---------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14186 for 225 contacts (-63.0/contact) +
2D Compatibility (PS) -4707 + (NN) -3002 + (LL) 2088
1D Compatibility (HY) -3600 + (ID) 500
Total energy: -23907.0 ( -106.25 by residue)
QMean score : 0.268
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: