Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVSAAKCKEERRLGINACKAVVYG-KSPTPACCHRMRVTHL----------GCVCSVITPKLAALVDVNRMIELVKGCGRKLP----RHYKCGSITFP
1SIY Chain:A ((2-90))
-----TCGQVQGNL-AQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI---
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26366 for 515 contacts (-51.2/contact) +
2D Compatibility (PS) -7342 + (NN) -8 + (LL) 844
1D Compatibility (HY) -400 + (ID) 750
Total energy: -34022.0 ( -66.06 by residue)
QMean score : 0.225
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: