Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DMSPTECKEERKVAGNACRPVLYWRSPSADCCQRVRVS-HV---ECVCPYVSTKTAAIIGGLGVPYV-VKKIEGCGRTVPRKFKCGSITTP
1HYP Chain:A ((25-79))
---------------------------VDDCCALIGGLGDIEAIVCLCIQLRA-L-G-I--LNLNRNLQLILNSCGRSYPSNATCPR----
General information:
TITO was launched using:
RESULT:
Template:
1HYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18468 for 249 contacts (-74.2/contact) +
2D Compatibility (PS) -4876 + (NN) 165 + (LL) 1640
1D Compatibility (HY) -3600 + (ID) 600
Total energy: -25739.0 ( -103.37 by residue)
QMean score : 0.172
(partial model without unconserved sides chains):
PDB file :
Tito_1HYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HYP-query.scw
PDB file :
Tito_Scwrl_1HYP.pdb
: