Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QTICNMSGEGLMACKPAVSPPNPAPPSAACCSALSHAD----------MHCLCSYRNSKLLPSM-GIDPNLALQLPKKCKFPNAAHC
2ALG Chain:A ((3-79))
--TCGQVSSSLAPCIPYVRGG--GAVPPACCNGIRNVNNLARTTPDRQAACNC-LKQL--SASVPGVNPNNAAALPGKCGVSIP---
General information:
TITO was launched using:
RESULT:
Template:
2ALG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31333 for 424 contacts (-73.9/contact) +
2D Compatibility (PS) -6767 + (NN) -6809 + (LL) 408
1D Compatibility (HY) -2800 + (ID) 950
Total energy: -48251.0 ( -113.80 by residue)
QMean score : 0.328
(partial model without unconserved sides chains):
PDB file :
Tito_2ALG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ALG-query.scw
PDB file :
Tito_Scwrl_2ALG.pdb
: