Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LSC--GDV--ATQLAPCINYLRS---AGPLP----PACCNGVKNLKNSAATTQDRRTACKCLINASKSI-------SGVN----FGLAAGLPGKCGVNIPYKISPSTNCDQVN---------
1HSS Chain:A ((5-124))
-MCYPGQAFQVPALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHI--------SEWCRCGALYSMLDSMYKEHGAFPRCRREVVKLTAASITAVCRLPIV--VDASGDGAYVCKDVAAYPDA
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47978 for 507 contacts (-94.6/contact) +
2D Compatibility (PS) -8549 + (NN) -5810 + (LL) 800
1D Compatibility (HY) -6000 + (ID) 900
Total energy: -68437.0 ( -134.98 by residue)
QMean score : 0.394
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: