Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----VTCSPMELSTCA---NAIISSSPPTATCCSKLKEQRSCLCQYVKN-PNLQKFINSPNARKVASTCGSPFPNC---
3L9A Chain:X ((9-88))
RDFFVITNSEYTFAGVHYAKGAVLHVSPTQKRAFWVIADQENFIKQVNKNIEYVEKNASPAFLQRIVEIYQVKFEGKNVH
General information:
TITO was launched using:
RESULT:
Template:
3L9A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20696 for 397 contacts (-52.1/contact) +
2D Compatibility (PS) -7272 + (NN) -630 + (LL) 0
1D Compatibility (HY) -3200 + (ID) 550
Total energy: -32348.0 ( -81.48 by residue)
QMean score : 0.227
(partial model without unconserved sides chains):
PDB file :
Tito_3L9A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L9A-query.scw
PDB file :
Tito_Scwrl_3L9A.pdb
: