Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
EEKAACVVT--DLKACLPDIIGETPPSTKCCTKLKD-----------KKSCFCEYLKNPLIAPY--MTS--AKQVLEACGVPVPVCQRF
1T12 Chain:A ((2-78))
---ITCGQVTSNLAPCLAYLRNTG-PLGRCCGGVKALVNSARTTEDRQIACTC--LKSAA-GAISGINLGKAAGLPSTCGVNIP-----
General information:
TITO was launched using:
RESULT:
Template:
1T12.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28965 for 366 contacts (-79.1/contact) +
2D Compatibility (PS) -5924 + (NN) -2599 + (LL) 1132
1D Compatibility (HY) -4400 + (ID) 850
Total energy: -41606.0 ( -113.68 by residue)
QMean score : 0.356
(partial model without unconserved sides chains):
PDB file :
Tito_1T12.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T12-query.scw
PDB file :
Tito_Scwrl_1T12.pdb
: