Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YCKESLHLCMQHLKLNDR-PTWLKCCDRLIIP-----------GPCMCKYIKDP------VQWKEAYRLMASCGKTVPLNQSLKSYFKCG
1AFH Chain:A ((10-81))
----AIAPCISYARGQGSGPS-AGCCSGVRSLNNAARTTADRRAACNC--LKNAAAGVSGLNAGNAASIPSKCGVSIPY-----------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32170 for 362 contacts (-88.9/contact) +
2D Compatibility (PS) -5416 + (NN) -16 + (LL) 1024
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -38728.0 ( -106.98 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: