Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQRSNILEITAGLFVLVFTIFLAFFAINKLSDIKKSYKGCYKIYGFFSNANGIEVGDSVKISGVNIGSITGISLDKATYVARLDMCISKDIK----LPIDSSALITSSGVVGSKFVNISPGSGIKLISNGGKIEYTQSEANVGGIIDKILNMFSK
1NNX Chain:A ((27-87))
---------------------------------------------TVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKV-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1NNX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26484 for 314 contacts (-84.3/contact) +
2D Compatibility (PS) -5705 + (NN) 1103 + (LL) 4620
1D Compatibility (HY) -800 + (ID) 300
Total energy: -27566.0 ( -87.79 by residue)
QMean score : 0.222
(partial model without unconserved sides chains):
PDB file :
Tito_1NNX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NNX-query.scw
PDB file :
Tito_Scwrl_1NNX.pdb
: