Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSLSPAIFSIGPVSIHWYSLAYVLGIVFAYWHLHKLDEQKIFTKNFYDSLLTATIIGIILGGRLGFVLIYDPISYINNPIEILKTWKGGMSFHGGAIGVLCAVIISCRRYNIPIFYTLDLISCGVPIGLFLGRIGNFVNGELFGRVTTMPWGMVFPESGDNLLRHPSQLYEAFFEGLLFFAIANSLFFLTRIRLYHGTLTGIAVIWYGTVRFVVEFFREPDYQVGYLWLDLTMGQLLSIFMTLLGIIVYLSALNSKFNTKSVA |
| 1VF5 Chain:E ((1-32)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------MILGAVFYIVFIALFFGIAVGIIFAIKSIKLI-------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VF5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -8959 for 134 contacts (-66.9/contact) +
2D Compatibility (PS) -3025 + (NN) 873 + (LL) 16536
1D Compatibility (HY) -4000 + (ID) 300
Total energy: 1125.0 ( 8.40 by residue)
QMean score : -0.351
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