Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLFDCLIIFIIVVCIIISITRGFIKELCALMFLFLSAFLTANHYDFFTINYSKYFNSKAMQNIFSTISVFIIFNLIFMIVNNWLMYILTPIRLGLIDRVTGTFVGALRGVLLSYVLFFAMHLYCYTVHDKKEEQSKIEAEDILPNWII------NSYSYQALFATVEDIVDVYVPESLILKIKEIGEGMANQEKLKGDKKEE |
3M9Q Chain:A ((4-92)) | --------------------------------------------------------------------------------------------------------------LRDETPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVLLKDTEENRQLQRELAEAAKL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3M9Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -21328 for 500 contacts (-42.7/contact) +
2D Compatibility (PS) -8607 + (NN) 3569 + (LL) 11348
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -18018.0 ( -36.04 by residue)
QMean score : -0.014
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