Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHLIVGLGNPGSQYELTYHNIGFIIVDAICKHWNFQ-SFSKKADCLITSSVINDNKIMLMKPYSFMNNSGIPVARIRNFYKFSLDNVIVIHDDADLEPGRIKIKKGGGSAGHNGLKSIDSSIGNDYWRLRFGIGRSDSQRSLADYVLSKFSNLDDVI--PLVERIAQNIHLMLQGNNIAFTNSIV
4LWR Chain:A ((9-190))
--LIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIGPNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQAMNQIN
General information:
TITO was launched using:
RESULT:
Template:
4LWR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127810 for 1467 contacts (-87.1/contact) +
2D Compatibility (PS) -19013 + (NN) -2833 + (LL) 252
1D Compatibility (HY) -10800 + (ID) 3050
Total energy: -163254.0 ( -111.28 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_4LWR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LWR-query.scw
PDB file :
Tito_Scwrl_4LWR.pdb
: