Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------MSPISIKETNADQLPNEKGTRYKE------NKEYFYTSLKNEAIGVVITG----LFITAAVMVPSVVGAVIYGIIAVLVVITTILHAIIST------LSSYREMEENKVEHVNSQAIKI---
2KMG Chain:A ((1-142))
MNTEEQPVTASLVAEAQRLDFLPTYFGPRLMMRGEALVYAWMRRLCERYNGAYWHYYALSDGGFYMAPDLAGRLEIEVNGNGFRGELSADAAGIVATLFALGQLAAEIADTDAADALIDRYHFLRGFAAGHPEAAAIYRAID
General information:
TITO was launched using:
RESULT:
Template:
2KMG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52687 for 742 contacts (-71.0/contact) +
2D Compatibility (PS) -10855 + (NN) -309 + (LL) 0
1D Compatibility (HY) -800 + (ID) 700
Total energy: -65351.0 ( -88.07 by residue)
QMean score : 0.076
(partial model without unconserved sides chains):
PDB file :
Tito_2KMG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KMG-query.scw
PDB file :
Tito_Scwrl_2KMG.pdb
: