Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDVTILTIFPEMFPGFLNYSLAGKALEKKIWNLQVINIRFFAKDRHLTVDHIPYGGGAGMIMRPDVVGDAVDSVLSTHKD-----TKFIYMTPSGTKFDQSIARELVGFPHITILCGRFEGIDQRVIDEYTPYELSIGDYILSGGEPAAMVILDVCVRLLPGVVNNSGSITEESFSYSGGVLEYPQYTRPKQWRKHRVPKILLSGNHKKISDWRQKQSQVITKRRRPELLDGEINDKFT
4H3Y Chain:A ((26-249))
-----IVTLFPDMFRALTDWGITSRAAKQERYGLRTWNPRDFTTDNYRTIDDRPYGGGPGMVMLARPLEDAINAAKAAQAEQGIGGARVVMMSPQGATLNHDKVMRFAAEPGLILLCGRYEAIDQRLIDRVVDEEVSLGDFVLSGGELPAMALIDAVVRHLPGVLNDAQSAVQDSF--VDGLLDCPHYTRPEEYDGVRVPDVLLGGHHAEIEQWRRREALRNTWLKRPDLIVQARKNKLL
General information:
TITO was launched using:
RESULT:
Template:
4H3Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175666 for 1488 contacts (-118.1/contact) +
2D Compatibility (PS) -23178 + (NN) -5009 + (LL) 572
1D Compatibility (HY) -16400 + (ID) 4100
Total energy: -223781.0 ( -150.39 by residue)
QMean score : 0.447
(partial model without unconserved sides chains):
PDB file :
Tito_4H3Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H3Y-query.scw
PDB file :
Tito_Scwrl_4H3Y.pdb
: