Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVMPDKWIREKAESFGMIEPF-VDHKSSKGVMSFGLSSY--------GYDARVDNKFKIFTNVNSAVVDPKDFSKNSFIDKETDVCIIPPNSFALASTVEYFHIPRDVLAICVGKSTYARCGIIVNVTPLEPGWKGHVTLEFSNTTPLPAKIYANEGACQFVFLSGESECEKSYDDIKGKYMNQHGITLPLVK
2YZJ Chain:A ((12-169))
----------------------ILSHQSIKNLLGKVILNYSEENVRENGYDLRICGD-KYYELVQGAELPEKKATLREIEFKER--AILSANHTYLFESCEEFNMPADLAVLITLKSTLARNGFLAPPTVIDAGYKGKVNVAI--TAVYNSSLKKGMATHHLIFLKLDKPTERLYN---GKY--QGGILI----
General information:
TITO was launched using:
RESULT:
Template:
2YZJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77822 for 1049 contacts (-74.2/contact) +
2D Compatibility (PS) -16010 + (NN) -4557 + (LL) 2668
1D Compatibility (HY) -9600 + (ID) 2150
Total energy: -107471.0 ( -102.45 by residue)
QMean score : 0.301
(partial model without unconserved sides chains):
PDB file :
Tito_2YZJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YZJ-query.scw
PDB file :
Tito_Scwrl_2YZJ.pdb
: