Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQATYASISLPGISSVEDVLEDARFGKLFILVDDENRENEGDLIVLAEKLKPEHVAFMVRYGTGIVFLAMTRLHMGRLGLEFMRRSNIDEKLTPHTAFTTSIDARYGIATGVSAHDRTHTILTAIDGKSTQDDIITPGHVFPIIANDGGVLARNGHTEASVEIAKLIGYNHAAVGCELVND-DGSMMRLPELLKFAEQHNIKLTTIDKLIRYIKKLS
1TKS Chain:A ((5-204))
-------------FTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERANQLELPPMLA---------GTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIININQLVEYISK--
General information:
TITO was launched using:
RESULT:
Template:
1TKS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149063 for 1658 contacts (-89.9/contact) +
2D Compatibility (PS) -21202 + (NN) -7190 + (LL) 1388
1D Compatibility (HY) -16400 + (ID) 4100
Total energy: -196567.0 ( -118.56 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_1TKS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TKS-query.scw
PDB file :
Tito_Scwrl_1TKS.pdb
: