Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPELPEVEIISNFLFDKIKNKQISGVTVNNWNL-RVPI-TQNIDDVIKGKVINNIKRRGKYIIWHIDNDIVVTVHLGMSGKLIYAKGEQAQNKHDHVIFSFSDNTSIIFNDPRKFGLVIILNKEQ--EVNFFNDFGIEPFTDEFNGDYLQKLLKSKKVNIKSALMNNKLIVGIGNIYASESLFRARISPLRSAQDLTYKECEKLATEIKNTLSDAIIAGGSTLKDYAQPSGSVGYFQNSFYVYGKVQKPCKICNNTITLIRQNGRSTYFCNACQN
3GP1 Chain:A ((1-273))
-PELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALIS-HLRMEGRYAVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVM---------------------HLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR
General information:
TITO was launched using:
RESULT:
Template:
3GP1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141198 for 1951 contacts (-72.4/contact) +
2D Compatibility (PS) -26790 + (NN) -12127 + (LL) 660
1D Compatibility (HY) -16400 + (ID) 4350
Total energy: -200205.0 ( -102.62 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_3GP1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GP1-query.scw
PDB file :
Tito_Scwrl_3GP1.pdb
: