Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVGAVQIKKTGGPEVLEFIDKSIGEPKGEEVLIRHTAIGLNRYDLEHRKG----VRKIKGL----PSVLGVEAVGVIEKLGKKI-----DDSLQIGD----------RVG---YCTAP-------PGAYCEKRVI-HQKYLVKIPDEIPDEVVAAVLFKGMTAHYLINQSYKIKPGAFVLVHGANGGLGQIICQWAKDKKG-VVIGSVSSDKKMEVALQNGCTYAINYNDKNFVSKIMEITQNRGVGAVYDPIGYSTSRLSFES--LSKFGIYVSYGQISGIAPVSFSLLSSRSLFATGTSIYHYKRDRFALVLTAMEIFEMVKKKLLTVRINKKYKFDEIIKAHHDMENRKVSGLNIIKVF |
| 2EER Chain:A ((3-345)) | ---AMRLVEIGKPLKLE--DIPIPKPKGSQVLIKIEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGRIEEVGDEVVGYSKGDLVAVNPWEGEGNCYYCRIGEEHLCDSPRWLGINYDGAYAEYVLVPHYKYLYKL-RRLSAVEAAPLTCSGVTTYRAVRKA-SLDPSKTLVVIGAGGGLGTMAIQIAKAVSGATIIGVDVREEALEAAKRAGADYVINASSQDPVSEIRRITQGKGADAVID-LNNSEKTLSIYPYVLAKQGKYVMVGLFGADLKYHAPLITLNEVQFIG-SLVGNQSDFLGI----MSLAEAGKVKPM---VTKTMKLEEANEAIDNLENFKAVGRQVLV-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2EER.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -163267 for 2721 contacts (-60.0/contact) +
2D Compatibility (PS) -32805 + (NN) -6029 + (LL) 1592
1D Compatibility (HY) -14800 + (ID) 5000
Total energy: -220309.0 ( -80.97 by residue)
QMean score : 0.427
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