Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNKKALLELSNGLKIELPVLSGTMGYDVLNIKDLYKVTGLLTYDPGFVSTASCSSAITFIDGDEGVLRYRGHDIADLAQSNDFTAVIYLLLYGKLPNLEQHKKFFLKIQELSKVPEQVVNVIKAFPKTAHPMSILIACFATLSALYHERYGNNVSNENL-DFGISAIAQVPAIIAMVYRHTNDQEFIDTDNELNYSKSFLRMMFGNALDNDKSTLFAKALDKIFTLHADHEQNASTAAVRVVGSAGSNLFACLSAGVATLWGPVHGGANESVINMLKEIEQSGNVDKFIEKAKDDKDPFKLMGFGHRVYKNYDPRARILKDACDEILNK--LEQDSKLLKIAKELEKIALKDEYFVVRKLYPNVDFYSGIIMNAINIPPSMFTPIFALARTTGWVTQWYEMINDKETKICRPRQLYVGK |
1IOM Chain:A ((13-365)) | ----------------------------------------------------TESRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQELEEFSAALARRRALPAHLLESFKRYPVSAHPMSFLRTAVSEFGML--DPTEGDISREALYEKGLDLIAKFATIVAANKRLKEGKEPIPPREDLSHAANFLYMANGVEPSPEQARL----MDAALILHAEHGFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGTPERAREWVREKLAKKE--RIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKEYQILKIVEEEAGKVLNP-----RGIYPNVDFYSGVVYSDLGFSLEFFTPIFAVARISGWVGHILEY-QELDNRLLRPGAKYVGE |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1IOM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -206094 for 3011 contacts (-68.4/contact) +
2D Compatibility (PS) -37387 + (NN) -16938 + (LL) 4592
1D Compatibility (HY) -22000 + (ID) 6000
Total energy: -283827.0 ( -94.26 by residue)
QMean score : 0.585
|
|
|