Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLDKTTKNLLITEINKILPEDSQNR-LISAVRYVLLAPAKHIRPFLVVASSQVFNVEIERVISIAMAVECIHTYSLIHDDLPCMDNSDTRRGQLSCHKRFDKATAVLAGDALLTLAFEILS--SLNEGSNK-RCEIIKALSQAIGAKGMVGGQILDIKTALHVIQHHDYLDPESSVINEHTRQLCNKNRTLGSCAKITPDSKIKEIHLMKTAKLFAASCEIGAIIGSATDKQRRALY---NYGVNLGLIFQAKDDIRDYKQDEV--------------NNLMSML----SKSEIENYIDNLFKQALDNLGELSGDTNYLYNLLNQVKRDD |
1RQJ Chain:A ((22-294)) | ----------------IAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALD-------------LDAEG---------------------KHVPLDALERIHRHKTGALIRAAVRLGAL--SAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDA-RQSLKQLAEQSLDTSALEALADYIIQRN |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RQJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -154285 for 2089 contacts (-73.9/contact) +
2D Compatibility (PS) -26304 + (NN) -12180 + (LL) 4000
1D Compatibility (HY) -15600 + (ID) 5600
Total energy: -209969.0 ( -100.51 by residue)
QMean score : 0.509
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