Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTFKPLPIFILSVLSSLPKARLSKNKIFIVFRFSSVTDKTTQNKKDTREVSRIFYSAIAPDC
1PEH Chain:? ((1-33))
-----------------------NEKK----YHLQERVDKVKKKVKDVEEKSKEWVQKVE---
General information:
TITO was launched using:
RESULT:
Template:
1PEH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5295 for 123 contacts (43.0/contact) +
2D Compatibility (PS) -3126 + (NN) 2141 + (LL) 2416
1D Compatibility (HY) -800 + (ID) 350
Total energy: 5576.0 ( 45.33 by residue)
QMean score : 0.211
(partial model without unconserved sides chains):
PDB file :
Tito_1PEH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PEH-query.scw
PDB file :
Tito_Scwrl_1PEH.pdb
: